banffIT: Automatize Diagnosis Standardized Assignation Using the Banff
Classification
Assigns standardized diagnoses using the Banff Classification
(Category 1 to 6 diagnoses, including Acute and Chronic active T-cell
mediated rejection as well as Active, Chronic active, and Chronic antibody
mediated rejection). The main function considers a minimal dataset
containing biopsies information in a specific format (described by a data
dictionary), verifies its content and format (based on the data dictionary),
assigns diagnoses, and creates a summary report. The package is developed on
the reference guide to the Banff classification of renal allograft pathology
Roufosse C, Simmonds N, Clahsen-van Groningen M, et al. A (2018) <doi:10.1097/TP.0000000000002366>.
The full description of the Banff classification is available at <https://banfffoundation.org/>.
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.4) |
| Imports: |
dplyr (≥ 1.1.0), rlang, tools, utils, crayon, stringr, fs, lubridate, tidyr, fabR, madshapR |
| Suggests: |
knitr, rmarkdown, usethis |
| Published: |
2024-05-08 |
| Author: |
Guillaume Fabre 
[aut, cre],
Ruth Sapir-Pichhadze [fnd, cph, ctb],
Samuel El Bouzaïdi Tiali [ctb],
Jérôme Laforme [ctb],
Tina Wey [ctb] |
| Maintainer: |
Guillaume Fabre <guijoseph.fabre at gmail.com> |
| BugReports: |
https://github.com/PersonalizedTransplantCare/banffIT/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/PersonalizedTransplantCare/banffIT |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Materials: |
README NEWS |
| CRAN checks: |
banffIT results |
Documentation:
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